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Agricultural production of smallholder farmers in Myanmar is facing soil fertility degradation and in consequence, crop yields decline due to the imbalances of nutrient supply. In most cases, all above ground biomass is removed from the fields after harvesting the crops and during land preparation for the next crop. Higher temperatures also stimulate the higher mineralisation rates and released mineral nutrients are lost from fallow lands before sowing the next crops. Regarding the addition of mineral fertilizers, except for cash crops, farmers are reluctant to apply fertilizers for the crops that are sown for household’s self-sufficiency. In the Dry Zone, irrigated agriculture is available in recent years and farmers could overcome water scarcity through irrigation. With the availability of irrigation water, farmers could prolong the cropping period, nevertheless crop yields are decreasing year by year. In recent decades, research findings are indicating the benefits of biochar application for soil fertility improvement and food security. Smallholder farmers can produce biochar from agricultural by-products such as pigeon pea stems, cotton stems and rice husks by using biochar stoves. Large-scale production is possible by producing both biochar and thermal energy simultaneously, such as getting rice husk biochar and producing thermal energy by burning rice husks. By those means, environmental pollution due to the smokes from stubble burnings and the health hazards from smokes arise from kitchens can also be reduced. Present research was conducted to test the effects of the application of biochars produced from different crop residues together with NPK fertilizers on crop yields and soil properties in the rice-chickpea-cotton cropping system of the Central Dry Zone area of Myanmar during 2012 and 2013 cropping seasons at Shwe Daung Farm, Mandalay Division, Myanmar. Effects of biochar applications in combination with NPK fertilizers were compared with NPK fertilizer (without biochar) application and the control (without biochar and NPK fertilizers). Biochars used in the experiments were produced from three kinds of locally available raw materials (rice husk, rice straw and, pigeon pea stem) at temperature above 550°C by using a kiln made from a 200-Liter diesel barrel. Field experiments were conducted on sandy loam soil in the Central Dry Zone of Myanmar. After harvesting rice in 2012, chickpea was sown without application of both organic and inorganic fertilizers. After harvesting chickpea in 2013, cotton was sown on the same experimental plots. Treatments were rice husk biochar (Rh) 20 Mg ha-1 + NPK fertilizers; rice straw biochar (Rs) 20 Mg ha-1 + NPK fertilizers; pigeon pea stem biochar (Ps) 20 Mg ha-1 + NPK fertilizers; rice husk biochar and farmyard manure mixture (Rh biochar + FYM) 10 Mg ha-1 + NPK fertilizers; NPK fertilizers (without biochar); and the control (without fertilizer and biochar). Biochar weights represented fresh biochar weights. Equal rate of NPK fertilizers were applied in all treatments. However, fertilizer rates were different with respect to the crops. In rice experiment, 100:50:50 kg ha-1 rate of Urea (N): Triple Super Phosphate (P): Muriate of potash (K) was applied. In cotton experiment, 100:30:117 kg ha-1 rate of Urea (N): Triple Super Phosphate (P): Muriate of potash (K) was applied. Crop growth data, yield component data and yield data of each treatment were recorded. Soil samples from topsoil (0-0.2 m) were taken before starting the experiments, after harvesting rice and cotton, respectively, and analysed. A biogeochemical model, denitrification decomposition (DNDC) model, was used to estimate soil organic carbon storage and greenhouse gas emissions during crop growing seasons and to quantify the long-term impact of biochar applications on rice, chickpea and cotton yields.The results from soil analyses indicated that although initial soil pH was at 8.0 and pH values of biochars ranged between 8.0 and 10.0 soil pH after two years of biochar application did not increase. pH values were below 8.0. That value was lower than initial soil pH. That could be due to the effect of the change of cropping system from upland to lowland rice cultivation and the effects of biochar additions to the alkaline sandy loamy soil of the experimental site. Although total exchangeable cation value was not significantly different among the treatments, compositions of major cations were significantly different among the treatments. Exchangeable potassium increased in Rs biochar + NPK applied soils. Exchangeable sodium increased in control, and conventional NPK fertilizer applied soils. Reduction of soil bulk density from 1.8 g cm-3 to 1.6-1.7 g cm-3 occurred in biochar treatments compared to control and conventional NPK fertilizer application treatments. Positive changes of total carbon and total nitrogen of soils were found in biochar treatments compared to control and conventional NPK fertilizer application. Application of pigeon pea stem biochar + NPK fertilizers showed the highest crop growth and the highest yield in rice. The highest chickpea yield was obtained from the plot that applied rice husk biochar + NPK fertilizers. Cotton crop growth and yield was the highest in rice husk biochar and farmyard manure mixture + NPK fertilizer application. The lowest crop growth and yield was obtained from the control in cotton. The results of this study suggested that biochars from different biomass materials had different effects on soil properties and crop yields under different growing conditions and cultivated crops. Although the applied biochars had a high pH, soil pH did not increase after biochar applications. The growth and yield of tested crops were higher than that of the control and conventional NPK fertilizer application. Rice husk biochar and farmyard manure mixture + NPK fertilizer application can be assumed as a suitable soil amendment application under upland crop cultivation. Pigeon pea stems biochar + NPK fertilizers should be applied in rice cultivation. Rice husk biochar + NPK fertilizers and rice husk biochar-farmyard manure mixture + NPK fertilizers showed as the appropriate biochar soil amendments for the study area compared to rice straw biochar + NPK fertilizers and pigeon pea stem biochar + NPK fertilizers. Application of these biochars increased total exchangeable cations, reduced bulk density, increased organic carbon, regulated soil pH and, can easily be accessed by smallholder farmers by promising crop yields for sustainable agricultural production. Rice straw biochar + NPK fertilizers and pigeon pea stem biochar + NPK fertilizers also showed positive influences on soil fertility and crop growth. However, extensive application of those biochars might require large-scale productions and distributions. To obtain the detail information regarding the impact of biochar application on the agro-ecosystem and surrounding atmosphere, further research activities may need to carry out under different agricultural production conditions. When model fitness was tested, it was found that DNDC model was fit for the simulation of crop yields and soil organic carbon under the conditions of the experimental site. Simulation of soil organic carbon dynamics and crop yields for 30 years and 50 years after the addition of biochars in combination with NPK fertilizers showed that such applications could maintain the crop yields at the same level up to 50 years. That could maintain soil organic carbon at a level higher than conventional NPK fertilizer application. Regarding the simulation of GHGs emissions, the model simulated nitrous oxide emission close to actual emissions of agricultural soils of Myanmar. Simulated CH4 emissions from control and conventional NPK fertilizer application variant were consistent with the well-known emissions of Myanmar rice fields. To confirm the accuracy of simulated CH4 emissions from biochar applied soils, it may need field investigations and validations of model results. Simulated effects of rice husk-, rice straw- and pigeon pea stem fresh biomass applications and that of rice husk-, rice straw- and pigeon pea stem biochar applications on rice, chickpea, cotton yields and soil organic carbon (SOC) were compared. Objective of this simulation was to compare the effects of fresh biomass-applications and the application of biochars produced from the same biomass on crop yields and SOC by using DNDC model. The results showed that simulated rice yields of rice husk biochar and rice straw biochar applications were 33% and 31%, respectively, higher than that of pigeon pea green manure applications. However, simulated rice yield from pigeon pea stem biochar application was 4% higher than that of iv pigeon pea stem green manure application. Simulated chickpea yield from pigeon pea green manure treatment was the highest among all of biochar and biomass applications. Simulated cotton yields obtained from fresh biomass applications were lower than that of biochar applications. In estimating the future yields, all crop yields from rice husk and rice straw biomass applications were lower than that of rice husk and rice straw biochar applications in the initial year of simulation. However, in the following years, the yields remained at the same level up to the end of simulated years. In pigeon pea stem green manure application, crop yields were higher than the other treatments since the initial year up to the end of simulated years. Simulated SOC was lower in fresh biomass applications compared to biochar applications.